A list of criteria for every plant to be planted in Jerusalem and in the other major cities of the State of Israel?
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Answer
Shalom and blessings,
The detailed list of rules you are proposing appears reasonable on the one hand, and very restrictive on the other.
Of course, as someone who is not a professional in this field, I am not in a position to determine what damage might result from such a drastic reduction of plant species in certain areas.
However, since you sent your question to a halachic website, it is apparently your wish to clarify the halachic approach to this matter.
So: the Gemara you mentioned is not dealing with proper urban‑planning regulations, but rather with the special honor of Jerusalem as the holiest city. It is only in that context that they decreed an absolute prohibition on planting gardens and orchards in the city. In other cities there are restrictions on sowing and planting because of the rights of the residents; see Bava Batra, chapter 2, where several limitations are listed on the very issues you raised: distancing trees from residential areas, distancing them from water cisterns, distancing them from public thoroughfares, and more.